I am looking for companies that can custom package flavored condoms
with company's logo etc. If anyone has a list or can get me a list
that would be great. Thanks.

Thanks for the fun and intresting question!

This is what I came up with after an hour:

Custom CondomsŪ, is a promotional product line which allows
organizations to print their logos and messages on a variety of condom
packages.
http://www.globalprotection.com/custom.html


They custom pakage condoms 
http://www.globalprotection.com/custom.html#wrappers
and they have flavored condoms, 
http://www.globalprotection.com/flavored.html
but you will have to contact them to see if they custom package the
flavored ones, as it does not mention this on the site.

search terms:
Custom Packaged Condoms
Custom Packaged Flavored Condoms