tmstulg,
As search results are detailed and unlikely to appear in an acceptable
format please perform manual search of DNA sequence, under the
following link:
http://www.ncbi.nlm.nih.gov/BLAST/
Suggested search pattern:
http://www.ncbi.nlm.nih.gov/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=50&ALIGNMENT_VIEW=Pairwise&CLIENT=web&DATABASE=nr&DESCRIPTIONS=100&ENTREZ_QUERY=%28none%29&EXPECT=10&FILTER=L&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&NCBI_GI=on&PAGE=Nucleotides&PROGRAM=blastn&SERVICE=plain&SET_DEFAULTS.x=34&SET_DEFAULTS.y=8&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GE
T_SEQUENCE=yes
Information obtained from such a search, is automatically cross
referenced with ?Medline? & ?Pubmed?, so relevant literature is just a
click away.
Kind regards
gfmaster
PS. The following is the attempted reproduction of search (Part 1).
Commenter is unable to distinguish what the most relevant literary
references may be (so I wont try, but as mentioned a manual search
will provide a detailed list).
Part 1.
BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
RID: 1101096079-27696-152147024812.BLASTQ1
Query=
(400 letters)
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
2,726,133 sequences; 12,305,973,192 total letters
If you have any problems or questions with the results of this search
please refer to the BLAST FAQs
Taxonomy reports
Distribution of 29 Blast Hits on the Query Sequence
Score E
Sequences producing significant alignments: (bits) Value
gi|32562856|ref|NM_060416.3| Caenorhabditis elegans abnorm... 686 0.0
gi|2618978|gb|AF020343.1|AF020343 Caenorhabditis elegans fo... 686 0.0
gi|32562855|ref|NM_060415.3| Caenorhabditis elegans abnorm... 652 0.0
gi|2623942|gb|AF032112.1|AF032112 Caenorhabditis elegans DA... 652 0.0
gi|2618976|gb|AF020342.1|AF020342 Caenorhabditis elegans fo... 652 0.0
gi|15055431|gb|AF039717.2| Caenorhabditis elegans cosmid R1... 418 e-114
gi|51973633|gb|CP000001.1| Bacillus cereus ZK, complete genome 42 0.97
gi|29898525|gb|AE017014.1| Bacillus cereus ATCC 14579 secti... 42 0.97
gi|49328240|gb|AE017355.1| Bacillus thuringiensis serovar k... 42 0.97
gi|30259630|gb|AE017040.1| Bacillus anthracis str. Ames sec... 42 0.97
gi|50082967|gb|AE017334.2| Bacillus anthracis str. 'Ames An... 42 0.97
gi|49176966|gb|AE017225.1| Bacillus anthracis str. Sterne, ... 42 0.97
gi|27762114|gb|AY112671.1| Trypanosoma cruzi repeated HaeII... 42 0.97
gi|12484340|gb|AC067889.6|AC067889 Homo sapiens chromosome ... 42 0.97
gi|42739980|gb|AE017280.1| Bacillus cereus ATCC 10987, sect... 42 0.97
gi|50948846|ref|XM_493781.1| Oryza sativa (japonica cultiva... 40 3.8
gi|34366489|emb|AL807785.7| Mouse DNA sequence from clone R... 40 3.8
gi|12330718|emb|AL138720.19| Human DNA sequence from clone ... 40 3.8
gi|15130750|emb|AL592504.6| Human DNA sequence from clone R... 40 3.8
gi|26986526|gb|AC134921.2| Homo sapiens BAC clone RP11-597F... 40 3.8
gi|6539576|dbj|AP000837.1| Oryza sativa (japonica cultivar-... 40 3.8
gi|45825244|gb|AC147070.5| Homo sapiens chromosome 4 clone ... 40 3.8
gi|3927860|gb|AC002509.1|AC002509 Homo sapiens chromosome Y... 40 3.8
gi|2580480|gb|AC002488.1|AC002488 Homo sapiens chromosome X... 40 3.8
gi|10048015|gb|AC010094.5|AC010094 Homo sapiens BAC clone R... 40 3.8
gi|42517288|gb|AC147055.2| Homo sapiens BAC clone RP11-1267... 40 3.8
gi|8218071|emb|AL121873.15|HSB362E11 Human DNA sequence fro... 40 3.8
Alignments
>gi|32562856|ref|NM_060416.3| Caenorhabditis elegans abnormal
DAuer Formation DAF-16, fork
head-related transcription factor (55.5 kD) (daf-16)
alternative variant a2, mRNA
Length = 2981
Score = 686 bits (346), Expect = 0.0
Identities = 382/394 (96%)
Strand = Plus / Plus
Query: 7 gagatgctggtagatcagggaactgatgcatcgtcatccgcctccacgtccacctcattt 66
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 303 gagatgctggtagatcagggaactgatgcatcgtcatccgcctccacgtccacctcatct 362
Query: 67 gtttcgagattcggagcggacacgttcatgaatacaccggatgatgtgatgatgattgtt 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 363 gtttcgagattcggagcggacacgttcatgaatacaccggatgatgtgatgatgaatgat 422
Query: 127 gatatggaaccgattcctcgtgatcggtgcaatacgtggccaatgcgtaggccgccattt 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 423 gatatggaaccgattcctcgtgatcggtgcaatacgtggccaatgcgtaggccgcaactc 482
Query: 187 gaaccaccactcaactcgagtcccattattcatgaacaaattcctgaagaagatgttggg 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 483 gaaccaccactcaactcgagtcccattattcatgaacaaattcctgaagaagatgctgac 542
Query: 247 ctatacgggagcaatgagcaatgtggacagctcggcggagcatcttcaaacgggttgaaa 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 543 ctatacgggagcaatgagcaatgtggacagctcggcggagcatcttcaaacgggtcgaca 602
Query: 307 gcaatgcttcatactccagatggaagcaattctcatcagacatcgtttccttcgaaaatg 366
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 603 gcaatgcttcatactccagatggaagcaattctcatcagacatcgtttccttcggaaatg 662
Query: 367 tccgaatcgccagacgataccgtatcgggaaaaa 400
||||||||||||||||||||||||||||||||||
Sbjct: 663 tccgaatcgccagacgataccgtatcgggaaaaa 696
>gi|2618978|gb|AF020343.1|AF020343 Caenorhabditis elegans fork
head-related transcription factor
DAF-16a2 (daf-16) mRNA, complete cds
Length = 2565
Score = 686 bits (346), Expect = 0.0
Identities = 382/394 (96%)
Strand = Plus / Plus
Query: 7 gagatgctggtagatcagggaactgatgcatcgtcatccgcctccacgtccacctcattt 66
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 303 gagatgctggtagatcagggaactgatgcatcgtcatccgcctccacgtccacctcatct 362
Query: 67 gtttcgagattcggagcggacacgttcatgaatacaccggatgatgtgatgatgattgtt 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 363 gtttcgagattcggagcggacacgttcatgaatacaccggatgatgtgatgatgaatgat 422
Query: 127 gatatggaaccgattcctcgtgatcggtgcaatacgtggccaatgcgtaggccgccattt 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 423 gatatggaaccgattcctcgtgatcggtgcaatacgtggccaatgcgtaggccgcaactc 482
Query: 187 gaaccaccactcaactcgagtcccattattcatgaacaaattcctgaagaagatgttggg 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 483 gaaccaccactcaactcgagtcccattattcatgaacaaattcctgaagaagatgctgac 542
Query: 247 ctatacgggagcaatgagcaatgtggacagctcggcggagcatcttcaaacgggttgaaa 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 543 ctatacgggagcaatgagcaatgtggacagctcggcggagcatcttcaaacgggtcgaca 602
Query: 307 gcaatgcttcatactccagatggaagcaattctcatcagacatcgtttccttcgaaaatg 366
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 603 gcaatgcttcatactccagatggaagcaattctcatcagacatcgtttccttcggaaatg 662
Query: 367 tccgaatcgccagacgataccgtatcgggaaaaa 400
||||||||||||||||||||||||||||||||||
Sbjct: 663 tccgaatcgccagacgataccgtatcgggaaaaa 696
>gi|32562855|ref|NM_060415.3| Caenorhabditis elegans abnormal
DAuer Formation DAF-16, fork
head-related transcription factor (55.8 kD) (daf-16)
alternative variant a1, complete mRNA
Length = 3037
Score = 652 bits (329), Expect = 0.0
Identities = 382/400 (95%), Gaps = 6/400 (1%)
Strand = Plus / Plus
Query: 7 gagatgctggtagatcagggaactgatgcatcgtcatccgcctccacgtccacctcattt 66
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 340 gagatgctggtagatcagggaactgatgcatcgtcatccgcctccacgtccacctcatct 399
Query: 67 gtttcgagattcggagcggacacgttcatgaatacaccggatgatgtgatgatgattgtt 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 400 gtttcgagattcggagcggacacgttcatgaatacaccggatgatgtgatgatgaatgat 459
Query: 127 gatatggaaccgattcctcgtgatcggtgcaatacgtggccaatgcgtaggccgccattt 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 460 gatatggaaccgattcctcgtgatcggtgcaatacgtggccaatgcgtaggccgcaactc 519
Query: 187 gaaccaccactcaactcgagtcccattattcatgaacaaattcctgaagaagatgttggg 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 520 gaaccaccactcaactcgagtcccattattcatgaacaaattcctgaagaagatgctgac 579
Query: 247 ctatacgggagcaatgagcaatgtggacagctcggcggagcatcttcaaacgggttgaaa 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 580 ctatacgggagcaatgagcaatgtggacagctcggcggagcatcttcaaacgggtcgaca 639
Query: 307 gcaatgcttcatactccagatggaagcaattctcatcagacatcgtttccttcg------ 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 gcaatgcttcatactccagatggaagcaattctcatcagacatcgtttccttcggatttc 699
Query: 361 aaaatgtccgaatcgccagacgataccgtatcgggaaaaa 400
| ||||||||||||||||||||||||||||||||||||||
Sbjct: 700 agaatgtccgaatcgccagacgataccgtatcgggaaaaa 739
>gi|2623942|gb|AF032112.1|AF032112 Caenorhabditis elegans DAF-16
(daf-16) mRNA, complete cds
Length = 3035
Score = 652 bits (329), Expect = 0.0
Identities = 382/400 (95%), Gaps = 6/400 (1%)
Strand = Plus / Plus
Query: 7 gagatgctggtagatcagggaactgatgcatcgtcatccgcctccacgtccacctcattt 66
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 340 gagatgctggtagatcagggaactgatgcatcgtcatccgcctccacgtccacctcatct 399
Query: 67 gtttcgagattcggagcggacacgttcatgaatacaccggatgatgtgatgatgattgtt 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 400 gtttcgagattcggagcggacacgttcatgaatacaccggatgatgtgatgatgaatgat 459
Query: 127 gatatggaaccgattcctcgtgatcggtgcaatacgtggccaatgcgtaggccgccattt 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 460 gatatggaaccgattcctcgtgatcggtgcaatacgtggccaatgcgtaggccgcaactc 519
Query: 187 gaaccaccactcaactcgagtcccattattcatgaacaaattcctgaagaagatgttggg 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 520 gaaccaccactcaactcgagtcccattattcatgaacaaattcctgaagaagatgctgac 579
Query: 247 ctatacgggagcaatgagcaatgtggacagctcggcggagcatcttcaaacgggttgaaa 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 580 ctatacgggagcaatgagcaatgtggacagctcggcggagcatcttcaaacgggtcgaca 639
Query: 307 gcaatgcttcatactccagatggaagcaattctcatcagacatcgtttccttcg------ 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 gcaatgcttcatactccagatggaagcaattctcatcagacatcgtttccttcggatttc 699
Query: 361 aaaatgtccgaatcgccagacgataccgtatcgggaaaaa 400
| ||||||||||||||||||||||||||||||||||||||
Sbjct: 700 agaatgtccgaatcgccagacgataccgtatcgggaaaaa 739
>gi|2618976|gb|AF020342.1|AF020342 Caenorhabditis elegans fork
head-related transcription factor
DAF-16a1 (daf-16) mRNA, complete cds
Length = 2579
Score = 652 bits (329), Expect = 0.0
Identities = 382/400 (95%), Gaps = 6/400 (1%)
Strand = Plus / Plus
Query: 7 gagatgctggtagatcagggaactgatgcatcgtcatccgcctccacgtccacctcattt 66
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 305 gagatgctggtagatcagggaactgatgcatcgtcatccgcctccacgtccacctcatct 364
Query: 67 gtttcgagattcggagcggacacgttcatgaatacaccggatgatgtgatgatgattgtt 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 365 gtttcgagattcggagcggacacgttcatgaatacaccggatgatgtgatgatgaatgat 424
Query: 127 gatatggaaccgattcctcgtgatcggtgcaatacgtggccaatgcgtaggccgccattt 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 425 gatatggaaccgattcctcgtgatcggtgcaatacgtggccaatgcgtaggccgcaactc 484
Query: 187 gaaccaccactcaactcgagtcccattattcatgaacaaattcctgaagaagatgttggg 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 485 gaaccaccactcaactcgagtcccattattcatgaacaaattcctgaagaagatgctgac 544
Query: 247 ctatacgggagcaatgagcaatgtggacagctcggcggagcatcttcaaacgggttgaaa 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 545 ctatacgggagcaatgagcaatgtggacagctcggcggagcatcttcaaacgggtcgaca 604
Query: 307 gcaatgcttcatactccagatggaagcaattctcatcagacatcgtttccttcg------ 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gcaatgcttcatactccagatggaagcaattctcatcagacatcgtttccttcggatttc 664
Query: 361 aaaatgtccgaatcgccagacgataccgtatcgggaaaaa 400
| ||||||||||||||||||||||||||||||||||||||
Sbjct: 665 agaatgtccgaatcgccagacgataccgtatcgggaaaaa 704
>gi|15055431|gb|AF039717.2| Caenorhabditis elegans cosmid R13H8,
complete sequence
Length = 19120
Score = 418 bits (211), Expect = e-114
Identities = 229/235 (97%)
Strand = Plus / Plus
Query: 7 gagatgctggtagatcagggaactgatgcatcgtcatccgcctccacgtccacctcattt 66
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 6415 gagatgctggtagatcagggaactgatgcatcgtcatccgcctccacgtccacctcatct 6474
Query: 67 gtttcgagattcggagcggacacgttcatgaatacaccggatgatgtgatgatgattgtt 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 6475 gtttcgagattcggagcggacacgttcatgaatacaccggatgatgtgatgatgaatgat 6534
Query: 127 gatatggaaccgattcctcgtgatcggtgcaatacgtggccaatgcgtaggccgccattt 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 6535 gatatggaaccgattcctcgtgatcggtgcaatacgtggccaatgcgtaggccgcaactc 6594
Query: 187 gaaccaccactcaactcgagtcccattattcatgaacaaattcctgaagaagatg 241
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6595 gaaccaccactcaactcgagtcccattattcatgaacaaattcctgaagaagatg 6649
Score = 210 bits (106), Expect = 2e-51
Identities = 112/114 (98%)
Strand = Plus / Plus
Query: 247 ctatacgggagcaatgagcaatgtggacagctcggcggagcatcttcaaacgggttgaaa 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 6897 ctatacgggagcaatgagcaatgtggacagctcggcggagcatcttcaaacgggtcgaca 6956
Query: 307 gcaatgcttcatactccagatggaagcaattctcatcagacatcgtttccttcg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6957 gcaatgcttcatactccagatggaagcaattctcatcagacatcgtttccttcg 7010
Score = 75.8 bits (38), Expect = 7e-11
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 363 aatgtccgaatcgccagacgataccgtatcgggaaaaa 400
||||||||||||||||||||||||||||||||||||||
Sbjct: 7663 aatgtccgaatcgccagacgataccgtatcgggaaaaa 7700
>gi|51973633|gb|CP000001.1| Bacillus cereus ZK, complete genome
Length = 5300915
Score = 42.1 bits (21), Expect = 0.97
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 220 gaacaaattcctgaagaagat 240
|||||||||||||||||||||
Sbjct: 4773925 gaacaaattcctgaagaagat 4773905
>gi|29898525|gb|AE017014.1| Bacillus cereus ATCC 14579 section 17
of 18 of the complete genome
Length = 300854
Score = 42.1 bits (21), Expect = 0.97
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 220 gaacaaattcctgaagaagat 240
|||||||||||||||||||||
Sbjct: 20305 gaacaaattcctgaagaagat 20285
>gi|49328240|gb|AE017355.1| Bacillus thuringiensis serovar
konkukian str. 97-27, complete genome
Length = 5237682
Score = 42.1 bits (21), Expect = 0.97
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 220 gaacaaattcctgaagaagat 240
|||||||||||||||||||||
Sbjct: 4709054 gaacaaattcctgaagaagat 4709034
>gi|30259630|gb|AE017040.1| Bacillus anthracis str. Ames section 17
of 18 of the complete genome
Length = 291205
Score = 42.1 bits (21), Expect = 0.97
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 220 gaacaaattcctgaagaagat 240
|||||||||||||||||||||
Sbjct: 27546 gaacaaattcctgaagaagat 27526
>gi|50082967|gb|AE017334.2| Bacillus anthracis str. 'Ames
Ancestor', complete genome
Length = 5227419
Score = 42.1 bits (21), Expect = 0.97
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 220 gaacaaattcctgaagaagat 240
|||||||||||||||||||||
Sbjct: 4699316 gaacaaattcctgaagaagat 4699296
>gi|49176966|gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome
Length = 5228663
Score = 42.1 bits (21), Expect = 0.97
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 220 gaacaaattcctgaagaagat 240
|||||||||||||||||||||
Sbjct: 4700525 gaacaaattcctgaagaagat 4700505
>gi|27762114|gb|AY112671.1| Trypanosoma cruzi repeated HaeIII
genomic fragment IGRE F310
Length = 1399
Score = 42.1 bits (21), Expect = 0.97
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 240 tgttgggctatacgggagcaatgag 264
||||||||| |||||||||||||||
Sbjct: 879 tgttgggctttacgggagcaatgag 903
>gi|12484340|gb|AC067889.6|AC067889 Homo sapiens chromosome 17,
clone CTD-2009B14, complete sequence
Length = 135356
Score = 42.1 bits (21), Expect = 0.97
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 209 ccattattcatgaacaaattc 229
|||||||||||||||||||||
Sbjct: 96375 ccattattcatgaacaaattc 96355
>gi|42739980|gb|AE017280.1| Bacillus cereus ATCC 10987, section 17
of 18 of the complete genome
Length = 287248
Score = 42.1 bits (21), Expect = 0.97
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 220 gaacaaattcctgaagaagat 240
|||||||||||||||||||||
Sbjct: 75615 gaacaaattcctgaagaagat 75595
>gi|50948846|ref|XM_493781.1| Oryza sativa (japonica
cultivar-group), Ozsa8500 predicted mRNA
Length = 303
Score = 40.1 bits (20), Expect = 3.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 110 atgtgatgatgattgttgat 129
||||||||||||||||||||
Sbjct: 68 atgtgatgatgattgttgat 87
>gi|34366489|emb|AL807785.7| Mouse DNA sequence from clone
RP23-460B18 on chromosome X, complete
sequence
Length = 69447
Score = 40.1 bits (20), Expect = 3.8
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 218 atgaacaaattcctgaagaagatg 241
||||||||||| ||||||||||||
Sbjct: 20240 atgaacaaattgctgaagaagatg 20263
>gi|12330718|emb|AL138720.19| Human DNA sequence from clone
RP11-146I2 on chromosome 6 Contains a
novel gene, the 3' end of a novel gene and a CpG island,
complete sequence
Length = 156615
Score = 40.1 bits (20), Expect = 3.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 tccgcctccacgtccacctc 62
||||||||||||||||||||
Sbjct: 54927 tccgcctccacgtccacctc 54946
>gi|15130750|emb|AL592504.6| Human DNA sequence from clone
RP11-320J16 on chromosome X. Contains
STSs and GSSs, complete sequence
Length = 173828
Score = 40.1 bits (20), Expect = 3.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 109 gatgtgatgatgattgttga 128
||||||||||||||||||||
Sbjct: 37126 gatgtgatgatgattgttga 37107
>gi|26986526|gb|AC134921.2| Homo sapiens BAC clone RP11-597F18 from
4, complete sequence
Length = 96776
Score = 40.1 bits (20), Expect = 3.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 321 tccagatggaagcaattctc 340
||||||||||||||||||||
Sbjct: 82593 tccagatggaagcaattctc 82612
>gi|6539576|dbj|AP000837.1| Oryza sativa (japonica cultivar-group)
genomic DNA, chromosome 1,
clone:P0424A08
Length = 151294
Score = 40.1 bits (20), Expect = 3.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 110 atgtgatgatgattgttgat 129
||||||||||||||||||||
Sbjct: 18833 atgtgatgatgattgttgat 18852
>gi|45825244|gb|AC147070.5| Homo sapiens chromosome 4 clone
RP13-1008F15, complete sequence
Length = 153296
Score = 40.1 bits (20), Expect = 3.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 321 tccagatggaagcaattctc 340
||||||||||||||||||||
Sbjct: 92646 tccagatggaagcaattctc 92627
>gi|3927860|gb|AC002509.1|AC002509 Homo sapiens chromosome Y, clone
2Y, complete sequence
Length = 142099
Score = 40.1 bits (20), Expect = 3.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 259 aatgagcaatgtggacagct 278
||||||||||||||||||||
Sbjct: 64995 aatgagcaatgtggacagct 65014
>gi|2580480|gb|AC002488.1|AC002488 Homo sapiens chromosome X, clone
36X, complete sequence
Length = 104710
Score = 40.1 bits (20), Expect = 3.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 259 aatgagcaatgtggacagct 278
||||||||||||||||||||
Sbjct: 90639 aatgagcaatgtggacagct 90620
>gi|10048015|gb|AC010094.5|AC010094 Homo sapiens BAC clone
RP11-336O5 from Y, complete sequence
Length = 118436
Score = 40.1 bits (20), Expect = 3.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 259 aatgagcaatgtggacagct 278
||||||||||||||||||||
Sbjct: 23416 aatgagcaatgtggacagct 23435
>gi|42517288|gb|AC147055.2| Homo sapiens BAC clone RP11-1267H10
from 4, complete sequence
Length = 184963
Score = 40.1 bits (20), Expect = 3.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 321 tccagatggaagcaattctc 340
||||||||||||||||||||
Sbjct: 74591 tccagatggaagcaattctc 74610
>gi|8218071|emb|AL121873.15|HSB362E11 Human DNA sequence from
clone RP13-362E11 on chromosome X. Contains a
pseudogene similar to mouse GEG-154 and mosquito MRRG, a
pseudogene similar to human MMS2 and chicken CROC-1B, ESTs,
STSs and GSSs, complete sequence
Length = 212280
Score = 40.1 bits (20), Expect = 3.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 259 aatgagcaatgtggacagct 278
||||||||||||||||||||
Sbjct: 146336 aatgagcaatgtggacagct 146355
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Nov 20, 2004 9:03 PM
Number of letters in database: -308,099,987
Number of sequences in database: 1,108,041
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 353,304
Number of Sequences: 2726133
Number of extensions: 353304
Number of successful extensions: 6230
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6227
Number of HSP's gapped (non-prelim): 3
length of query: 802
length of database: 12,305,973,192
effective HSP length: 22
effective length of query: 378
effective length of database: 12,245,998,266
effective search space: 4628987344548
effective search space used: 4628987344548
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits) |
