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Subject:
need easy python for large array
Category: Computers > Programming Asked by: microlytic-ga List Price: $33.00 |
Posted:
22 Nov 2006 13:14 PST
Expires: 04 Dec 2006 11:41 PST Question ID: 784903 |
Hi. I need to manipulate some data to big for excel, sorting it and extracting data in Python. sample data follows. Each line has coordinates, 2 values in 2 columns. The coordinates for line one are chr2L 9674997. The score for this line is in the last tab-delineated column and is equal to 0.10. For every line I need to convert that score from a log value to an integer (from -4.0 to 4.0 to a number from 1 to 1000), and then I need to filter the data so that the only lines remaining are those who have two consecutive lines with scores in the top 25th percentile. So the data needs to be sorted first to get that consecutive thing, first by chromosome (chr2L) and then by position in column 4 (967499). I want at the end another huge text file, just like the first but with with the non-qualifying lines removed. I hope that is easy. Thanks chr2L NS 53zt2 9674997 9675046 0.10 chr2L NS 53zt2 5351242 5351291 0.23 chr2L NS 53zt2 16228047 16228096 0.23 chr2L NS 53zt2 6674892 6674941 0.80 chr2L NS 53zt2 3219264 3219313 -0.01 300000 rows like this. |
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