Is there an organization in the San Francisco East Bay area that
offers a program similar to the "Healing Heart and Mind" series
offered by East Hill Church in Gresham Oregon? 
http://www.easthill.org/restoration.htm

I'm especially interested in the "Wounded by Shame, Healed by Grace"
sessions.

I haven't found that specific workshop offered in your area, but the
website you cited gives the author of the program as Jeff VanVonderen.
His website (he's based in California, by the way) has direct contact
information:
   "If you want to attend a workshop for your own recovery, or sponsor
one for others with recovery issues, or offer a training workshop for
your staff or other helping professionals, call Jeff at 1-949-248-5666
or use the form below to email."
http://www.innervention.com/dox/workshop.htm

And the "Wounded by Shame, Healed by Grace" video is on sale here,
among other sites:
http://www.growingingrace.com/store/showitem.cfm?itemNo=S00130&Format=Sets&Subject=Recovery

You might also want to check out general resources for Christian
Counseling in the San Francisco area, e.g.:
http://christiancounseling.net/ -- "Christian Counseling Centers was
established in 1983 as a non-denominational, non-profit community
mental health agency. It is the largest provider of Christian
counseling and psychotherapy services in Northern California. Its
mission is to provide comprehensive and effective services which are
integrated and consistent with Christian beliefs and values."